[ccp4bb] superpose

- Protein crystallography

Main steps:

- Protein purification
- Crystallisation

Special:

- Programs for crystallography
- X-ray detectors

Basic tutorials:

   - Chemistry
   - Protein
   - Peptide
   - Amino Acids

Xtal community:

- CCP4BB

CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: surface drawings
From: "Green, Todd" green {- at -} CBSE {- dot -} UAB {- dot -} EDU
Date: 2007-03-12

Next message:
Subject: Re: superpose
From: "Douglas L {- dot -} Theobald" dtheobald {- at -} BRANDEIS {- dot -} EDU
Date: 2007-03-12

Subject: superpose
From: "Juan Sanchez-Weatherby (UEA)" j {- dot -} sanchez-weatherby {- at -} UEA {- dot -} AC {- dot -} UK
Date: 2007-03-12

Dear all

I have three questions that might have been answered before but I haven't
been able to find them.

1) I was wondering whether anyone could tell me what does (in the Superpose
output) "RMS B DISPLACEMENT" stand for?

2) If "B" is B-factor how meaningful is it if the haven't been normalised
prior to the comparison?

3) Lastly I was wondering if there is a way of putting RMS deviation values
in the B-factor column of a PDB file so it can coloured according to RMS
instead of B-factor.

Thank you very much

Juan

Juan Sanchez-Weatherby

School of Biological Sciences

University of East Anglia

Norwich NR4 7TJ

United Kingdom

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CCP4bb navigation

CCP4bb <-- 1999 <-- November 1999 <-- 30 November 1999

Previous message:
Subject: surface drawings
From: "Green, Todd" green {- at -} CBSE {- dot -} UAB {- dot -} EDU
Date: 2007-03-12

Next message:
Subject: Re: superpose
From: "Douglas L {- dot -} Theobald" dtheobald {- at -} BRANDEIS {- dot -} EDU
Date: 2007-03-12