Re: [ccp4bb] PDB Crazy or Me?

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CCP4bb <-- 2007 <-- October 2007 <-- 09 October 2007

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Subject: PDB Crazy or Me?
From: James Stroud jstroud {- at -} MBI {- dot -} UCLA {- dot -} EDU
Date: 2007-10-08

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From: David Briggs drdavidcbriggs {- at -} GMAIL {- dot -} COM
Date: 2007-10-09

Subject: Re: PDB Crazy or Me?
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2007-10-09

Did you go to this web site?
http://remediation.wwpdb.org/downloads.html

It has the new dictionary stuff
Eleanor

James Stroud wrote:
> Hello All,
>
> I noticed some things different about the PDB today causing me to rub
> my eyes vigorously and to put my nose right on my monitor in disbelief:
>
> * -> ' for nucleic acid sugars
> O#P -> OP# for the phosphate oxygens
> C5A -> C7 for thymidine exocyclic methyl (didn't it used to be C5A?)
>
> And who knows what else. In fact, my real question *is* "who knows
> what else?" I looked at the RCSB site and googled PDB changes, etc,
> but really couldn't find the low-down. Another question is how long
> before it all changes again? I noticed some threads here with PDB in
> the title recently, but didn't read them because I thought they
> discussed esoteric and philosophical issues that do not affect us
> common folk.
>
> James
>
> --
> James Stroud
> UCLA-DOE Institute for Genomics and Proteomics
> Box 951570
> Los Angeles, CA 90095
>
> http://www.jamesstroud.com
>
>

CCP4bb navigation

CCP4bb <-- 2007 <-- October 2007 <-- 09 October 2007

Previous message:
Subject: PDB Crazy or Me?
From: James Stroud jstroud {- at -} MBI {- dot -} UCLA {- dot -} EDU
Date: 2007-10-08

Next message:
Subject: Vary b-factors from a plane/point.
From: David Briggs drdavidcbriggs {- at -} GMAIL {- dot -} COM
Date: 2007-10-09