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Re: [ccp4bb] Vary b-factors from a plane/point.
 

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CCP4bb <-- 2007 <-- October 2007 <-- 09 October 2007
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Subject: Re: Vary b-factors from a plane/point.
From: Gerard DVD Kleywegt gerard {- at -} XRAY {- dot -} BMC {- dot -} UU {- dot -} SE
Date: 2007-10-09
> I want to vary b-factors smoothly from either point or a plane. This is for
> pretty-picture purposes.
> I can then colour molecule by b-factor and get nice, pretty effects.

the BFactor PSeudo command in MOLEMAN2 can be used for this. Option D sets
B-factors by distance to an arbitrary point. by aligning your molecule
appropriately, the X option (colour by X-coordinate) can be used to colour by
distance from a plane

see: http://xray.bmc.uu.se/usf/moleman2_man.html#S62

--dvd

******************************************************************
Gerard J. Kleywegt
[Research Fellow of the Royal Swedish Academy of Sciences]
Dept. of Cell & Molecular Biology University of Uppsala
Biomedical Centre Box 596
SE-751 24 Uppsala SWEDEN

http://xray.bmc.uu.se/gerard/ mailto:gerard@xray.bmc.uu.se
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The opinions in this message are fictional. Any similarity
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CCP4bb navigation

CCP4bb <-- 2007 <-- October 2007 <-- 09 October 2007
Previous message:
Subject: Hybrid Methods Conference Announcement
From: Wes Sundquist wes {- at -} BIOCHEM {- dot -} UTAH {- dot -} EDU
Date: 2007-10-09 		Next message:
Subject: Re: PDB Crazy or Me?
From: price {- at -} UCHICAGO {- dot -} EDU price {- at -} UCHICAGO {- dot -} EDU
Date: 2007-10-09


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