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CCP4bb <-- 2007 <-- November 2007 <-- 05 November 2007
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Subject: Re: protein degradation?
From: Jeroen Mesters mesters {- at -} BIOCHEM {- dot -} UNI-LUEBECK {- dot -} DE
Date: 2007-11-05 		Next message:
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From: Xiao-Dan Li xiao {- dot -} li {- at -} PSI {- dot -} CH
Date: 2007-11-05


Subject: CCP4i working with PC cluster system
From: "Hirata, Kunio" hirata {- at -} SPRING8 {- dot -} OR {- dot -} JP
Date: 2007-11-05
Dear ccp4bb,

I am in trouble to execute ccp4 jobs on CCP4i with a PC cluster system.
Sun Grid Engine, we are using, the job management application running on
the Linux cluster, sometimes has troubles to synchronize with CCP4i well.


0. Batch job setting is modified to be suitable for our system according
to a CCP4i manual.
(Configure interface initial parameters : command [qsub -V -cwd])

1. Submit a job to Sun Grid Engine by selecting the button [batch queue]
on a CCP4i GUI.


"job status" in the status window subsequently changes
[REMOTE](running) -> [FINISHED](finished)


Even if the submitted job is completed, the status does not change from
[REMOTE]. I can confirm if the job is finished or not by opening the
output log file of a submitted job. In all cases I previously met the
troubles, jobs were finished normally but status never changed till I
restarted CCP4i.


1. I would like to use CCP4i which completely synchronizes with Sun Grid
Engine. What should I do?
2. What is a trigger to read/write the status file, which would manage [REMOTE]/[FINISHED]
status, into the CCP4i project directory?

Sincerely yours,
Kunio Hirata

--------------------------------
1-1-1 Kouto Sayo-cho Sayo-gun
Hyogo Japan
679-5148

RIKEN/SPrig-8 post doctoral fellow
Kunio Hirata
e-mail:hirata@spring8.or.jp
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