[ccp4bb] Refmac 5.2.0019 failed in macbook

Protein crystallography Programs for crystallography X-ray detectors
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CCP4bb <-- 2008 <-- January 2008 <-- 03 January 2008

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Subject: Re: Refmac 5.4.0066 versus Refmac 5.4.0034
From: Garib Murshudov garib {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-01-03

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Subject: Refmac 5.2.0019 failed in macbook
From: Raja Dey deyraja1 {- at -} YAHOO {- dot -} CO {- dot -} IN
Date: 2008-01-03

Hi,
I did install ccp4 in my macbook( intel and 10.5
OS X). It is working for most of the programs(ccp4).
But, when I submit a refmac job it failed with the
following message. I am using GUI. The same version of
the program is running successfully in pc-linux. Does
anyone have solution to this problem? Looking
forward...

### CCP4 6.0: Refmac_5.2.0019 version 5.2.0019 :
06/09/05##

###############################################################
User: rajadey Run date: 3/ 1/2008 Run time:
09:49:15

Please reference: Collaborative Computational
Project, Number 4. 1994.
"The CCP4 Suite: Programs for Protein
Crystallography". Acta Cryst. D50, 760-763.
as well as any specific reference in the program
write-up.

Data line--- make check NONE
Data line--- make hydrogen YES hout NO
peptide NO cispeptide YES ssbridge YES
symmetry YES sugar YES connectivity NO
link NO
Data line--- refi type REST resi MLKF
meth CGMAT bref ISOT
Data line--- ncyc 1
Data line--- scal type SIMP reso 3.589 80.845
LSSC ANISO EXPE
Data line--- solvent YES VDWProb 1.2 IONProb
0.8 RSHRink 0.8
Data line--- weight MATRIX 0.3
Data line--- monitor MEDIUM torsion 10.0
distance 10.0 angle 10.0 plane 10.0 chiral
10.0 bfactor 10.0 bsphere 10.0 rbond 10.0
ncsr 10.0
Data line--- labin FP=F_nat SIGFP=SIGF_nat
FREE=FreeR_flag
Data line--- labout FC=FC FWT=FWT PHIC=PHIC
PHWT=PHWT DELFWT=DELFWT PHDELWT=PHDELWT FOM=FOM
Data line--- PNAME liang
Data line--- DNAME nat
Data line--- RSIZE 80
Data line--- END

OPENED INPUT MTZ FILE
Logical Name: HKLIN Filename:
/Users/rajadey/test-ccp4/p6522_native.mtz

Spacegroup information obtained from library file:
Logical Name: SYMINFO Filename:
/sw/share/xtal/ccp4-6.0.2/lib/data/syminfo.lib

FORMATTED OLD file opened on unit 45
Logical name: ATOMSF, Filename:
/sw/share/xtal/ccp4-6.0.2/lib/data/atomsf.lib

***************************************************************************
* Information from CCP4Interface script
***************************************************************************
The program run with command: refmac5 XYZIN
"/Users/rajadey/test-ccp4/edited_54.49_53.44.pdb"
XYZOUT
"/Users/rajadey/test-ccp4/tmp/liang_3_2_pdb_1.tmp"
HKLIN "/Users/rajadey/test-ccp4/p6522_native.mtz"
HKLOUT
"/Users/rajadey/test-ccp4/tmp/liang_3_4_mtz_1.tmp"
LIBOUT "/Users/rajadey/test-ccp4/liang_3_lib.cif"
has failed with error message
child killed: bus error
***************************************************************************

#CCP4I TERMINATION STATUS 0 child killed: bus error
#CCP4I TERMINATION TIME 03 Jan 2008 09:49:30
#CCP4I MESSAGE Task failed

Thanks...
Raja

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CCP4bb <-- 2008 <-- January 2008 <-- 03 January 2008

Previous message:
Subject: Re: Refmac 5.4.0066 versus Refmac 5.4.0034
From: Garib Murshudov garib {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-01-03

Next message:
Subject: Zn fingers and Ni columns
From: price {- at -} UCHICAGO {- dot -} EDU price {- at -} UCHICAGO {- dot -} EDU
Date: 2008-01-03