Quick navigation:        Home   |    Site Map   ||    References   |    Biography   ||    Copyright   |    Other copyright   |    Contact us   |   
Protein structure
 

Re: [ccp4bb] Any programs other than GRASP have a surface scribing function?
 

Basic tutorials: 		 
 

CCP4bb navigation

CCP4bb <-- 2008 <-- January 2008 <-- 08 January 2008
Previous message:
Subject: Re: Any programs other than GRASP have a surface scribing function?
From: hua jing jing_hua {- at -} HOTMAIL {- dot -} COM
Date: 2008-01-08 		Next message:
Subject: DNA contamination post-Talon?
From: Jacob Keller j-keller2 {- at -} MD {- dot -} NORTHWESTERN {- dot -} EDU
Date: 2008-01-08


Subject: Re: Any programs other than GRASP have a surface scribing function?
From: Avinash Gill gillavinash {- at -} GMAIL {- dot -} COM
Date: 2008-01-08
I have used CCP4MG to produce a molecular surface of the model that i have
been working on. There is an example in the online documentation to produce
a molecular surface for the entire molecule or for a subset of atoms, and
color it by solvent accessibility or other properties. It produces beautiful
images, although if you do not have a relatively fast processer, computation
of the surface might slow your machine temporarily. The have been able to
produce these molecular surfaces in CCP4MG running on a Windows Vista
machine.

Hope this helps.

Avi.

On Jan 8, 2008 3:01 PM, James Thompson < Thompson.James@mayo.edu> wrote:

> Dear CCP4'ers,
>
> Any Windows/Linux/OS X programs have a surface scribing function similar
> to that found in GRASP, to quickly draw the border of a surface selection
> (or subset) and calculate or display local features of the molecular
> surface? I have no access to SGIs now. I have a memory of similar function
> elsewhere but am not finding the ability within GRASP2, DINO, CHIMERA, etc.
> Perhaps I'm thinking of Setor which was also IRIX, and perhaps this memory
> is suspect... Other selection methods for a molecular surface require more
> of my time to define the subset.
>
> Many thanks,
>
> Jim
>
> James R. Thompson
>
> Assistant Professor of Biophysics
>
> Mayo Clinic College of Medicine
>
> Department of Physiology and Biomedical Engineering
>
> Mayo Proteomics Research Center
>
> Office 507-538-3891
>
> Fax 507-538-3954
>
> E-mail thompson.james@mayo.edu
>
>
>

CCP4bb navigation

CCP4bb <-- 2008 <-- January 2008 <-- 08 January 2008
Previous message:
Subject: Re: Any programs other than GRASP have a surface scribing function?
From: hua jing jing_hua {- at -} HOTMAIL {- dot -} COM
Date: 2008-01-08 		Next message:
Subject: DNA contamination post-Talon?
From: Jacob Keller j-keller2 {- at -} MD {- dot -} NORTHWESTERN {- dot -} EDU
Date: 2008-01-08


ProteinCrystallography.org: Copyright 2006-2007 by Quid United Ltd