Quick navigation:        Home   |    Site Map   ||    References   |    Biography   ||    Copyright   |    Other copyright   |    Contact us   |   
Protein structure
 

Re: [ccp4bb] Any programs other than GRASP have a surface scribing function?
 

Basic tutorials: 		 
 

CCP4bb navigation

CCP4bb <-- 2008 <-- January 2008 <-- 09 January 2008
Previous message:
Subject: Re: how to model glycosylated residues?
From: Jiamu Du jiamudu {- at -} GMAIL {- dot -} COM
Date: 2008-01-09 		Next message:
Subject: Re: How to refine large moleculars?
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-01-09


Subject: Re: Any programs other than GRASP have a surface scribing function?
From: Liz Potterton lizp {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-01-09
James,

CCP4mg will allow you select a set of atoms and draw a surface over them
in whatever colour scheme that you choose.

The tutorial explaining this is at

http://www.ysbl.york.ac.uk/~ccp4mg/ccp4mg_help/tutorial/surfaces.html

Cheers

Liz


James Thompson wrote:
>
> Dear CCP4'ers,
>
> Any Windows/Linux/OS X programs have a surface scribing function
> similar to that found in GRASP, to quickly draw the border of a
> surface selection (or subset) and calculate or display local features
> of the molecular surface? I have no access to SGIs now. I have a
> memory of similar function elsewhere but am not finding the ability
> within GRASP2, DINO, CHIMERA, etc. Perhaps I'm thinking of Setor
> which was also IRIX, and perhaps this memory is suspect... Other
> selection methods for a molecular surface require more of my time to
> define the subset.
>
> Many thanks,
>
> Jim
>
> James R. Thompson
>
> Assistant Professor of Biophysics
>
> Mayo Clinic College of Medicine
>
> Department of Physiology and Biomedical Engineering
>
> Mayo Proteomics Research Center
>
> Office 507-538-3891
>
> Fax 507-538-3954
>
> E-mail thompson.james@mayo.edu
>
>
>

CCP4bb navigation

CCP4bb <-- 2008 <-- January 2008 <-- 09 January 2008
Previous message:
Subject: Re: how to model glycosylated residues?
From: Jiamu Du jiamudu {- at -} GMAIL {- dot -} COM
Date: 2008-01-09 		Next message:
Subject: Re: How to refine large moleculars?
From: Eleanor Dodson ccp4 {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-01-09


ProteinCrystallography.org: Copyright 2006-2007 by Quid United Ltd