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[ccp4bb] MrBUMP FASTA
 

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CCP4bb <-- 2008 <-- January 2008 <-- 14 January 2008
Previous message:
Subject: Re: PERL system call to CCP4
From: Ezra Peisach epeisach {- at -} BU {- dot -} EDU
Date: 2008-01-14 		Next message:
Subject: Re: PERL system call to CCP4
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-01-14


Subject: MrBUMP FASTA
From: Doug Bailey baileyd {- at -} NCIFCRF {- dot -} GOV
Date: 2008-01-14
Hello Everyone,

Just to let you know our lab just starting using the MrBUMP program
(v0.4.1), so our problem(s) could definitely be from lack of knowledge.
Anyway, when we try a FASTA search from CCP4i, either over the internet or
locally, things just seem to hang at "Getting Template Sequences and
Multiple Alignment" . See output from logfile.

Any ideas, directions or suggestions would be greatly appreciated.


Thanks in advance,

Doug





###################################
### Fasta search ###
###################################

Fasta log message: E value used in Fasta search: 2.00e-02
Fasta log message: Performing Fasta search locally
Fasta log message: Fasta DB set to:
/people5/bhaumik/.ccp4_mrbump/pdb_ATOMseqs.txt


Number of templates after user specified chains are included: 169

---------------------------------------
Adding chains from local files...
---------------------------------------

Fasta log message: Number of matches: 170


---------------------------------------------------------
Fasta: Getting Template Sequences and Multiple Alignment:
---------------------------------------------------------


Douglas Bailey Ph: 301-846-5328
NCI-Frederick Fax:
301-846-6322
1050 Boyles Street E-mail: baileyd@ncifcrf.gov
Frederick, Maryland 21702

CCP4bb navigation

CCP4bb <-- 2008 <-- January 2008 <-- 14 January 2008
Previous message:
Subject: Re: PERL system call to CCP4
From: Ezra Peisach epeisach {- at -} BU {- dot -} EDU
Date: 2008-01-14 		Next message:
Subject: Re: PERL system call to CCP4
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-01-14


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