[ccp4bb] Protein-protein docking

Protein crystallography Programs for crystallography X-ray detectors
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CCP4bb <-- 2008 <-- February 2008 <-- 12 February 2008

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Subject: Re: Does NCS bias a randomly-chosen test set (even if not enforced)?
From: Dirk Kostrewa kostrewa {- at -} LMB {- dot -} UNI-MUENCHEN {- dot -} DE
Date: 2008-02-12

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From: mesters mesters {- at -} BIOCHEM {- dot -} UNI-LUEBECK {- dot -} DE
Date: 2008-02-12

Subject: Protein-protein docking
From: MARTYN SYMMONS martainn_oshiomains {- at -} BTINTERNET {- dot -} COM
Date: 2008-02-12

I would recommend giving Dave Ritchie's Hex program a go - it is blisteringly quick. It's limited to local searches so it is best if you have a reasonable idea where you expect the docking surface to be (mutations, NMR shift data etc). We used it to refine solutions from searches with crosslinking restraints. It works nicely interactively if you explore the receptor surface by centring the search on different residues.

Best wishes
Martyn

Martyn Symmons
Department of Pathology
University of Cambridge

CCP4bb navigation

CCP4bb <-- 2008 <-- February 2008 <-- 12 February 2008

Previous message:
Subject: Re: Does NCS bias a randomly-chosen test set (even if not enforced)?
From: Dirk Kostrewa kostrewa {- at -} LMB {- dot -} UNI-MUENCHEN {- dot -} DE
Date: 2008-02-12

Next message:
Subject: Thermofluor
From: mesters mesters {- at -} BIOCHEM {- dot -} UNI-LUEBECK {- dot -} DE
Date: 2008-02-12