Re: [ccp4bb] PISA parameters for surface area calculation

Protein crystallography Programs for crystallography X-ray detectors
Basic tutorials:
Protein Peptide

CCP4bb navigation

CCP4bb <-- 2008 <-- February 2008 <-- 18 February 2008

Previous message:
Subject: Check the conformation of one important amino acid
From: Sun Tang suntang2222 {- at -} YAHOO {- dot -} COM
Date: 2008-02-18

Next message:
Subject: Re: Check the conformation of one important amino acid
From: Chavas Leo ccp4hnaalas {- at -} GMAIL {- dot -} COM
Date: 2008-02-18

Subject: Re: PISA parameters for surface area calculation
From: Chavas Leo ccp4hnaalas {- at -} GMAIL {- dot -} COM
Date: 2008-02-18

Dear Rafael --

> I am using PISA to calculate the surface interface of a homdimeric
> protein. Does anyone know where I can find the parameters (probe
> radius, atomic radii, etc) PISA uses to calculate surface area?

not sure, but would that help?:

http://www.ebi.ac.uk/msd-srv/prot_int/picite.html

HTH

Kind regards.

Leo
------------------------------------------------------------
Chavas Leonard, Ph.D.
Research Associate
------------------------------------------------------------
Faculty of Life Sciences
The University of Manchester
The Michael Smith Building
Oxford Road
Manchester Lancashire
M13 9PT
------------------------------------------------------------
Tel: +44(0)161-275-1586
e-mail: Leonard.Chavas@manchester.ac.uk

CCP4bb navigation

CCP4bb <-- 2008 <-- February 2008 <-- 18 February 2008

Previous message:
Subject: Check the conformation of one important amino acid
From: Sun Tang suntang2222 {- at -} YAHOO {- dot -} COM
Date: 2008-02-18

Next message:
Subject: Re: Check the conformation of one important amino acid
From: Chavas Leo ccp4hnaalas {- at -} GMAIL {- dot -} COM
Date: 2008-02-18