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Re: [ccp4bb] Problem with DM |
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CCP4bb navigationCCP4bb <-- 2008 <-- March 2008 <-- 05 March 2008Subject: Re: Problem with DM From: "P {- dot -} J {- dot -} Briggs" p {- dot -} j {- dot -} briggs {- at -} DL {- dot -} AC {- dot -} UK Date: 2008-03-05 I think that you may have failed to specify a solvent content fraction before attempting to run DM - please try rerunning the job and checking the "Required Parameters" folder about halfway down the window. If the box next to the text "Fraction solvent content" is empty and coloured yellow then this is likely to be the problem. The solvent fraction should be between 0.0 (all protein, no solvent) and 1.0 (all solvent, no protein). Please check the DM documentation for more information. Hope that this helps, best wishes Peter yuhua wrote: > Dear Crystallographers, > > I failed to run DM in ccp4 package recently and got the errors as below: > > dm > reference: > > K. Cowtan (1994), > dm: An automated procedure for phase improvement by density modification. > Joint CCP4 and ESF-EACBM Newsletter on Protein Crystallography, 31, > p34-38. > > > > Contents> > > > > > > > > > > > Command Input> > Data line--- MODE > SOLV > Data line--- > href="/usr/local/ccp4-6.0.2/docs/dm.html#combine">COMBINE PERT > Data line--- > href="/usr/local/ccp4-6.0.2/docs/dm.html#scheme">SCHEME ALL > Data line--- > href="/usr/local/ccp4-6.0.2/docs/dm.html#ncycle">NCYCLE AUTO > Data line--- SOLCONT > > > *** Warning > Real sub-argument expected > > Data line--- > href="/usr/local/ccp4-6.0.2/docs/dm.html#ncsmask">NCSMASK > Data line--- LABIN > FP=F_p2 SIGFP=SIGF_p2 PHIO=PHIC FOMO=FOM > Data line--- > href="/usr/local/ccp4-6.0.2/docs/dm.html#labout">LABOUT FDM=FDM > PHIDM=PHIDM FOMDM=FOMDM > dm: Input error (see above) > Times: User: 0.0s System: 0.0s Elapsed: 0:00 > > |