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CCP4bb <-- 2008 <-- March 2008 <-- 10 March 2008

Previous message:
Subject: Re: overlapping DNA in prt-DNA complex structure
From: James Stroud jstroud {- at -} MBI {- dot -} UCLA {- dot -} EDU
Date: 2008-03-10

Next message:
Subject: Staff Position Available: Macromolecular Crystallography Laboratory Manager
From: Ann West awest {- at -} OU {- dot -} EDU
Date: 2008-03-10

Subject:
From: Marius Schmidt marius {- dot -} schmidt {- at -} PH {- dot -} TUM {- dot -} DE
Date: 2008-03-10

Dear Colleagues,
A month ago I posted a request to the ccp4bb regarding
the malfunction of Xfit under Suse Linux 10.3.
I got a lot of suggestions.
At least I want to share my experience.

1.) I did exactly that what Paul suggested (see below) installing
fedora libX11s
wget
http://koji.fedoraproject.org/packages/libX11/1.0.3/8.fc7/i386/libX11-1.
0.3-8.fc7.i386.rpm
wget
http://koji.fedoraproject.org/packages/libX11/1.0.3/8.fc7/i386/libX11-de
vel-1.0.3-8.fc7.i386.rpm
rpm -U --oldpackage --force libX11-1.0.3-8.fc7.i386.rpm
libX11-devel-1.0.3-8.fc7.i386.rpm

> copy the library files from /usr/lib to the xtalview lib:
> cp /usr/lib/libX11.so.6.2.0 /usr/local/XtalView/lib/ibmpclinux2/
>
> mv to xtalview lib directory and make sym links:
> ln -s libX11.so.6.2.0 libX11.so
> ln -s libX11.so.6.2.0 libX11.so.6

2.) Of course, then the X11 system for Suse does not work,
and you get stuck with boot level 2 or so in the text-
mode.

3.) in the text mode, I started yast and installed all xorg-X11 libraries
which I could find (search X11) from the Suse 10.3 installation DVD.

4.) Problem solved.
XtalView suite works fine.
Linux works fine.

5.) I still do not know what exactly the problem was, although I
care less.

Thanks to everyone who responded (especially Paul).

Greetings
Marius

> Hi Marius,
>
> I believe I have solved it, thought it isn't too pretty. I
> essentially
> used the method people have used for nmrdraw:
> http://tech.groups.yahoo.com/group/nmrpipe/message/1630
>
> This involves downgrading to the earlier packages (see the link) by
> doing something like this:
> rpm -U --force --oldpackage --nodeps libX11-1.0.3-8.fc7.i386.rpm
> libX11-devel-1.0.3-8.fc7.i386.rpm
>
> copy the library files from /usr/lib to the xtalview lib:
> cp /usr/lib/libX11.so.6.2.0 /usr/local/XtalView/lib/ibmpclinux2/
>
> mv to xtalview lib directory and make sym links:
> ln -s libX11.so.6.2.0 libX11.so
> ln -s libX11.so.6.2.0 libX11.so.6
>
> and now do a 'yum update' to replace the libX11 packages.
>
> I just got this working and haven't tested it much. I just ran xfit
> and
> opened a model. I haven't tried anything else from xtalview.
>
> --paul
>
> Marius Schmidt wrote:
>> Dear Paul,
>> I would be very greatful, if you could report
>> your (hopefully successfull) solution to me.
>> Thanks very much for the reply.
>>
>> Marius
>>
>>> Hi Marius,
>>>
>>> I haven't quite gotten it to work yet, but it appears to require the
>>> update of the libxcb package and the setting of a variable,
>>> LIBXCB_ALLOW_SLOPPY_LOCK. I just ran into this problem today after
>>> installing Fedora 8. I'll see if I can't get it resolved soon.
>>>
>>> --paul
>>>
>>> Marius Schmidt wrote:
>>>> Dear colleagues,
>>>> someone out there who has installed XtalView
>>>> with the new SUSE Linux 10.3.
>>>> When launching Xfit, there is an error message
>>>> xfit: xcb_io.c: _XAllocID: Assertion `!(dpy -> flags & etc. etc.
>>>> when googeling for this error, it is well reported to
>>>> occur for the newest Linux systems. Anyone an idea how
>>>> to go around it (should I install an older Linux)?
>>>> ccp4 is working fine.
>>>>
>>>> Best regards
>>>> Marius
>>>>
>>>>
>>>>
>>>>
>>>> Dr.habil. Marius Schmidt
>>>> Asst. Professor
>>>> University of Wisconsin-Milwaukee
>>>> Department of Physics Room 454
>>>> 1900 E. Kenwood Blvd.
>>>> Milwaukee, WI 53211
>>>>
>>>> phone: +1-414-229-4338
>>>> email: m-schmidt@uwm.edu
>>>> http://users.physik.tu-muenchen.de/marius/
>>>>
>>
>> Dr.habil. Marius Schmidt
>> Asst. Professor
>> University of Wisconsin-Milwaukee
>> Department of Physics Room 454
>> 1900 E. Kenwood Blvd.
>> Milwaukee, WI 53211
>>
>> phone: +1-414-229-4338
>> email: m-schmidt@uwm.edu
>> http://users.physik.tu-muenchen.de/marius/
>>
>>

Dr.habil. Marius Schmidt
Asst. Professor
University of Wisconsin-Milwaukee
Department of Physics Room 454
1900 E. Kenwood Blvd.
Milwaukee, WI 53211

phone: +1-414-229-4338
email: m-schmidt@uwm.edu
http://users.physik.tu-muenchen.de/marius/

CCP4bb navigation

CCP4bb <-- 2008 <-- March 2008 <-- 10 March 2008

Previous message:
Subject: Re: overlapping DNA in prt-DNA complex structure
From: James Stroud jstroud {- at -} MBI {- dot -} UCLA {- dot -} EDU
Date: 2008-03-10

Next message:
Subject: Staff Position Available: Macromolecular Crystallography Laboratory Manager
From: Ann West awest {- at -} OU {- dot -} EDU
Date: 2008-03-10