[ccp4bb] topology and parameter file

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CCP4bb <-- 2008 <-- March 2008 <-- 10 March 2008

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Subject: Staff Position Available: Macromolecular Crystallography Laboratory Manager
From: Ann West awest {- at -} OU {- dot -} EDU
Date: 2008-03-10

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Subject: Nucleic acid refinement with Refmac at 3.6A
From: Alan Cheung cheung {- at -} LMB {- dot -} UNI-MUENCHEN {- dot -} DE
Date: 2008-03-10

Subject: topology and parameter file
From: Surajit Banerjee sb_ju {- at -} YAHOO {- dot -} COM
Date: 2008-03-10

Hi All,
Though it is not directly associated with CCP4, but to get an answer I have chosen this path.........

I am working with a DNA-Protein structure and need a topology-parameter file (CNS) for the modified DNA site. To create the files I am using "The Dundee PRODRG2 Server" and have a problem regarding the Unique name of the atoms. The F&Q of the site suggests to use first three character to be unique, which didn't work for me.

Any other program or new suggestions will be appreciated.

Regards
Surajit

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CCP4bb navigation

CCP4bb <-- 2008 <-- March 2008 <-- 10 March 2008

Previous message:
Subject: Staff Position Available: Macromolecular Crystallography Laboratory Manager
From: Ann West awest {- at -} OU {- dot -} EDU
Date: 2008-03-10

Next message:
Subject: Nucleic acid refinement with Refmac at 3.6A
From: Alan Cheung cheung {- at -} LMB {- dot -} UNI-MUENCHEN {- dot -} DE
Date: 2008-03-10