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Re: [ccp4bb] ccp4i - Directories & Project Directory Error |
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CCP4bb navigationCCP4bb <-- 2008 <-- March 2008 <-- 25 March 2008Subject: Re: ccp4i - Directories & Project Directory Error From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU Date: 2008-03-25 an xterm, and it sets the DISPLAY variable automatically. I assume you have write-permissions in the directory it is trying to make the .CCP4 directory? On Mar 25, 2008, at 9:32 AM, Kurt Padilla wrote: > Sue, > > Currently, when I type in ccp4i into Terminal, X11 launches and then > CCP4 > does too. I am running OS X 10.5 with a fink installation. > > Kurt > > On Tue, Mar 25, 2008 at 12:04 PM, Sue Roberts > wrote: > >> I also thought the problem was using the Terminal window and not the >> X11 window, but, interestingly, typing ccp4i in a Terminal window, >> not an X11 window does work. >> X11 does need to be installed and running, -- that could be the >> problem. >> >> (Caveat, this is in 10.4, not 10.5 - I have 10.5 but haven't >> installed it yet because of the coot discussions) >> >> Sue >> >> On Mar 25, 2008, at 8:37 AM, Anastassis Perrakis wrote: >>> Hi - >>> >>> You need to add to your .chrc, or type in an ***X11*** window (and >>> not in the Terminal). >>> >>> source /usr/local/ccp4-6.0.2//bin/ccp4.setup-csh >>> >>> then it will work. >>> >>> it does not really install a real application in the OSX sense. >>> >>> A. >>> >>> On Mar 25, 2008, at 15:47, Kurt Padilla wrote: >>> >>>> William, >>>> >>>> Thanks for your advice. I intend to give it a try in the next few >>>> days. Hopefully, I will have some positive results to share. >>>> >>>> Anastassis, >>>> >>>> I tried using the binary from the link you provided, but I was >>>> unable to get the program to run even though Installer said that >>>> the installation was successful. I don't remember the details, but >>>> the installation did not produce an executable .app file and >>>> typing ccp4i into Terminal didn't launch the program either. >>>> >>>> Kurt >>>> >>>> On Tue, Mar 25, 2008 at 10:35 AM, Anastassis Perrakis >>>> >>>> Hi - >>>> >>>> I am sure that its not a fink problem really, but why not try the >>>> CCP4 distribution? >>>> >>>> http://www.ccp4.ac.uk/download/ >>>> >>>> A. >>>> >>>> On Mar 22, 2008, at 5:34, Kurt Padilla wrote: >>>> >>>>> Hello, >>>>> >>>>> When I click on 'Apply' in the Directories & Project Directory >>>>> window, I get the following error: >>>>> >>>>> ERROR saving parameters to file /Users/Kat/.CCP4/unix/ >>>> directories.def >>>>> >>>>> Has anyone else encountered this error? I installed CCP4 on a >>>>> MacBook Pro running Leopard using fink. This error always occurs, >>>>> except in one mysterious instance today, but only to hang in >>>>> refmac. I checked, but there is no .CCP4 folder in '/Users/Kat/'. >>>>> When I tried to create one myself, OS X wouldn't allow me to do so >>>>> according to some rule that folder names can't begin with periods. >>>>> I am getting the impression that CCP4 is buggy on OS X. Any >>>>> information on avoiding these problems and getting CCP4 to work? >>>>> >>>>> Thank You, >>>>> Kurt Padilla >>>>> >>>>> on the behalf of: >>>>> >>>>> Kathleen Frey >>>>> Amy Anderson Lab >>>>> Dept. of Pharmaceutical Science >>>>> University of Connecticut >>>> >>>> >>> >> >> Sue Roberts >> Biochemistry & Biophysics >> University of Arizona >> >> suer@email.arizona.edu >> CCP4bb navigationCCP4bb <-- 2008 <-- March 2008 <-- 25 March 2008 |
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