Re: [ccp4bb] program to draw 2D image of a peptide

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From: Pavel Afonine pafonine {- at -} LBL {- dot -} GOV
Date: 2008-03-28

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From: Tânia_Oliveira taniao {- at -} ITQB {- dot -} UNL {- dot -} PT
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Subject: Re: program to draw 2D image of a peptide
From: "Kumar, Abhinav" abhinavk {- at -} SLAC {- dot -} STANFORD {- dot -} EDU
Date: 2008-03-28

I have a perl script to do this. It creates a pymol script and runs pymol to generate the view you are looking for.

Thanks
Abhinav

Stanford Synchrotron Radiation Laboratory
Joint Center for Structural Genomics
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Phone: (650) 926-2992
Fax: (650) 926-3292

-----Original Message-----
From: CCP4 bulletin board [mailto:CCP4BB@JISCMAIL.AC.UK] On Behalf Of Sandra Dias
Sent: Friday, March 28, 2008 9:15 AM
To: CCP4BB@JISCMAIL.AC.UK
Subject: [ccp4bb] program to draw 2D image of a peptide

Does anyone know of a program, different from Ligplot, that can draw 2D
image of peptides out a pdb file? It would be a plus if it can establish
and draw contacts between this peptide and the neighbors residues.
thanks in advance for any input.
Sandra

CCP4bb navigation

CCP4bb <-- 2008 <-- March 2008 <-- 28 March 2008

Previous message:
Subject: Re: Model ensemble for x-ray crystallography
From: Pavel Afonine pafonine {- at -} LBL {- dot -} GOV
Date: 2008-03-28

Next message:
Subject: 3D structure based alignment
From: Tânia_Oliveira taniao {- at -} ITQB {- dot -} UNL {- dot -} PT
Date: 2008-03-28