Re: [ccp4bb] program to draw 2D image of a peptide

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Subject: 3D structure based alignment
From: Tânia_Oliveira taniao {- at -} ITQB {- dot -} UNL {- dot -} PT
Date: 2008-03-28

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Subject: Re: problem with Coot and ccp4mg
From: Kay Diederichs kay {- dot -} diederichs {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2008-03-28

Subject: Re: program to draw 2D image of a peptide
From: Sandra Dias sd277 {- at -} CORNELL {- dot -} EDU
Date: 2008-03-28

I want to draw a picture of the contact of a 22-mer peptide with a protein
in a 2-D perspective. Would be basically be what Ligplot does, however I
don`t like the output of this program. I know that using programs like
ChemDraw I can do it manually but decide to see if anyone knew about a
program that could at least project a 3-D pdb file of a peptide into a 2-D
image. As already posted MIFit is an option but it seems that only does it
for individual residues.
Sandra

At 01:15 PM 3/28/2008, you wrote:
>just out of curiosity, why ?
>
> A.
>
>On 28 Mar 2008, at 17:15, Sandra Dias wrote:
>
>>Does anyone know of a program, different from Ligplot, that can
>>draw 2D image of peptides out a pdb file? It would be a plus if it
>>can establish and draw contacts between this peptide and the
>>neighbors residues.
>>thanks in advance for any input.
>>Sandra

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CCP4bb <-- 2008 <-- March 2008 <-- 28 March 2008

Previous message:
Subject: 3D structure based alignment
From: Tânia_Oliveira taniao {- at -} ITQB {- dot -} UNL {- dot -} PT
Date: 2008-03-28

Next message:
Subject: Re: problem with Coot and ccp4mg
From: Kay Diederichs kay {- dot -} diederichs {- at -} UNI-KONSTANZ {- dot -} DE
Date: 2008-03-28