Re: [ccp4bb] OMIT map from Sfcheck

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CCP4bb <-- 2008 <-- April 2008 <-- 03 April 2008

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Subject: fixing position in the refinement: Shelx, refmac5
From: U Sam us_x {- at -} HOTMAIL {- dot -} COM
Date: 2008-04-03

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Subject: Re: fixing position in the refinement: Shelx, refmac5
From: Garib Murshudov garib {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-04-03

Subject: Re: OMIT map from Sfcheck
From: Michael Giffin mijogiffin {- at -} GMAIL {- dot -} COM
Date: 2008-04-03

i get the same error on OS X 10.5.2 and 10.4.11:

>sfcheck -f refmac2.mtz -m refmac2.pdb -out y -nomit 2 -map

the error:
----------------------------------------------------
Open failed: Unit: 11, File: sfcheck_scr.dat (logical: sfcheck_scr.dat)

Last system error message: Bad file descriptor
CCP4: Open failed: File: sfcheck_scr.dat
CCP4: Open failed: File: sfcheck_scr.dat
----------------------------------------------------

the binary file sfcheck_scr.dat exists.

On Ubuntu Linux 7.10, it executes with no errors.

versions are the same on all systems
CCP4, v6.0.2,
sfcheck /Vers 7.2.02; 01.10.2006/

any help is appreciated.

Mike

On Thu, Mar 27, 2008 at 6:06 AM, Kristof Van Hecke
wrote:
> Dear,
>
> I'm intending to make an OMIT map using Sfcheck (ccp4i 6.0.2, Mac OS X
> Tiger, PPC).
> However, the program terminates with:
>
> "has failed with error message
> 1525-005
> 1525-005
> 1525-005
> 1525-005
> 1525-005
> 1525-005
> "
>
> When using 'command line' from a script (with '-nomit 2 -map -origin -out
> y') I got:
>
> "Last system error message: No such file or directory
> CCP4: Open failed: File: /Users/kristof/data/11mer/data2/sfcheck_scr.dat
> "
>
> Does anyone know this problem please..?
>
> Many thanks
>
> Kristof
>
>
>
> --------------------------------------
> Kristof Van Hecke, PhD
> Biomoleculaire Architectuur
> Celestijnenlaan 200 F
> B-3001 Heverlee (Leuven)
> Tel: +32(0)16327477
> --------------------------------------
>
>
>
>
>
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CCP4bb navigation
CCP4bb <-- 2008 <-- April 2008 <-- 03 April 2008

Previous message:
Subject: fixing position in the refinement: Shelx, refmac5
From: U Sam us_x {- at -} HOTMAIL {- dot -} COM
Date: 2008-04-03 Next message:
Subject: Re: fixing position in the refinement: Shelx, refmac5
From: Garib Murshudov garib {- at -} YSBL {- dot -} YORK {- dot -} AC {- dot -} UK
Date: 2008-04-03