Re: [ccp4bb] HKL2000 and gcc4

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CCP4bb <-- 2008 <-- May 2008 <-- 05 May 2008

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Subject: Re: Negative density around C of COO-
From: James Holton JMHolton {- at -} LBL {- dot -} GOV
Date: 2008-05-05

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Subject: Re: HKL2000 and gcc4
From: Robert Campbell robert {- dot -} campbell {- at -} QUEENSU {- dot -} CA
Date: 2008-05-05

Subject: Re: HKL2000 and gcc4
From: Roger Rowlett rrowlett {- at -} MAIL {- dot -} COLGATE {- dot -} EDU
Date: 2008-05-05

Chris Waddling wrote:
> Basically, the newest version of HKL2000 won't run on Linux machines that do
> not have the libg2c.so.0 library (part of gcc3) in /usr/lib/ . This is a
> problem for us, as every new computer we acquire uses a version of Linux
> (that is no longer terribly new) that uses gcc4 (which does not have the
> libg2c.so.0 library) and not gcc3.
>
> We've tried pointing our LD_LIBRARY_PATH to a directory that has this old
> library in it, but HKL2000 won't recognize it. I have tried an experiment
> of putting the library into the /usr/lib/ folder, and HKl2000 runs, but our
> sys-admin refuses to let it stay there.
>
> Has anyone made this work (i.e. Am I missing something that is probably
> quite simple)?
>
> Thanks,
>
> Chris
>
> --
> Dr. Christopher A. Waddling, Ph.D.
> University of California at San Francisco
> MC 2140
> S126C
> 600 16th St.,
> San Francisco, CA
> 94158-2517
> (415) 476-8288 (office)
> (415) 502-7779 (lab)
> (415) 514-4142 (fax)
> (415) 810-7556 (cell)
> waddling@msg.ucsf.edu
> AIM duckie2k1
> Skype chriswaddling
>
Have you installed the compatibility libraries compat-libstdc++-33 and
libstdc++296? This is easily accomplished using yum if it is installed,
e.g.,

$ yum -y install compat-libstdc++-33 compat-libstdc++-296

These libraries are required for programs compiled using GCC 3.x

Cheers,

--
------------------------------------------------------------------------
Roger S. Rowlett
Professor
Colgate University Presidential Scholar
Department of Chemistry
Colgate University
13 Oak Drive
Hamilton, NY 13346

tel: (315)-228-7245
ofc: (315)-228-7395
fax: (315)-228-7935
email: rrowlett@mail.colgate.edu

CCP4bb navigation

CCP4bb <-- 2008 <-- May 2008 <-- 05 May 2008

Previous message:
Subject: Re: Negative density around C of COO-
From: James Holton JMHolton {- at -} LBL {- dot -} GOV
Date: 2008-05-05

Next message:
Subject: Re: HKL2000 and gcc4
From: Robert Campbell robert {- dot -} campbell {- at -} QUEENSU {- dot -} CA
Date: 2008-05-05