[ccp4bb] Refmac Error

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CCP4bb <-- 2008 <-- May 2008 <-- 05 May 2008

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Subject: Re: Negative density around C of COO-
From: Lijun Liu liulj {- at -} UOXRAY {- dot -} UOREGON {- dot -} EDU
Date: 2008-05-05

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Subject: Re: Refmac Error
From: Roger Rowlett rrowlett {- at -} MAIL {- dot -} COLGATE {- dot -} EDU
Date: 2008-05-05

Subject: Refmac Error
From: Kianoush ksadree {- at -} YAHOO {- dot -} COM
Date: 2008-05-05

Dear All,

I occasionally get the following error after running refmac:

#CCP4I TERMINATION STATUS 0 Error from script /home/local/LINUX/ccp4-6.0.2/ccp4i/scripts/refmac5.script: error writing "stdout": I/O error

The above error is from the last lines of the log file. It seems that refinement runs fine (I see refinement cycle statistics etc.), however, no pdb or mtz file is written out.

I use CCP4 version 6.0.2.

Thanks for your suggestions,
Kianoush

*********************
Kianoush Sadre-Bazzaz
Graduate Student, Chris Hill Lab
University of Utah Biochemistry Department
15 N Medical Drive East RM 4100
Salt Lake City UT 84112-5650 USA
(801)585-7068
kianoush@biochem.utah.edu

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CCP4bb navigation

CCP4bb <-- 2008 <-- May 2008 <-- 05 May 2008

Previous message:
Subject: Re: Negative density around C of COO-
From: Lijun Liu liulj {- at -} UOXRAY {- dot -} UOREGON {- dot -} EDU
Date: 2008-05-05

Next message:
Subject: Re: Refmac Error
From: Roger Rowlett rrowlett {- at -} MAIL {- dot -} COLGATE {- dot -} EDU
Date: 2008-05-05