Re: [ccp4bb] Refmac Error

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Subject: Refmac Error
From: Kianoush ksadree {- at -} YAHOO {- dot -} COM
Date: 2008-05-05

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From: Partha Chakrabarti ppchak {- at -} GMAIL {- dot -} COM
Date: 2008-05-05

Subject: Re: Refmac Error
From: Roger Rowlett rrowlett {- at -} MAIL {- dot -} COLGATE {- dot -} EDU
Date: 2008-05-05

Kianoush wrote:
> Dear All,
>
> I occasionally get the following error after running refmac:
>
> #CCP4I TERMINATION STATUS 0 Error from script
> /home/local/LINUX/ccp4-6.0.2/ccp4i/scripts/refmac5.script: error
> writing "stdout": I/O error
>
> The above error is from the last lines of the log file. It seems that
> refinement runs fine (I see refinement cycle statistics etc.),
> however, no pdb or mtz file is written out.
>
> I use CCP4 version 6.0.2.
>
> Thanks for your suggestions,
> Kianoush
>
>
> *********************
> Kianoush Sadre-Bazzaz
> Graduate Student, Chris Hill Lab
> University of Utah Biochemistry Department
> 15 N Medical Drive East RM 4100
> Salt Lake City UT 84112-5650 USA
> (801)585-7068
> kianoush@biochem.utah.edu
>
> ------------------------------------------------------------------------
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> it now.
>

The very first thing to check is whether or not you have permission to
write in the directory where the PDB and MTZ files are to be written to.
This might explain an intermittent error of the type you describe.

Cheers,

--
------------------------------------------------------------------------
Roger S. Rowlett
Professor
Colgate University Presidential Scholar
Department of Chemistry
Colgate University
13 Oak Drive
Hamilton, NY 13346

tel: (315)-228-7245
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email: rrowlett@mail.colgate.edu

CCP4bb navigation

CCP4bb <-- 2008 <-- May 2008 <-- 05 May 2008

Previous message:
Subject: Refmac Error
From: Kianoush ksadree {- at -} YAHOO {- dot -} COM
Date: 2008-05-05

Next message:
Subject: Re: HKL2000 and gcc4
From: Partha Chakrabarti ppchak {- at -} GMAIL {- dot -} COM
Date: 2008-05-05