[ccp4bb] environ.def / default.def

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CCP4bb <-- 2008 <-- May 2008 <-- 16 May 2008

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From: Nathan I Nicely nathan {- dot -} nicely {- at -} DUKE {- dot -} EDU
Date: 2008-05-16

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Subject: Re: No permission to CCP4I TOP dir
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-05-16

Subject: environ.def / default.def
From: Eike Schulz eschulz1 {- at -} GWDG {- dot -} DE
Date: 2008-05-16

Hello everybody,

once more a beginners question on some probably Linux related problem.

Eventhough my ccp4 installation seemed to work fine all the way MTZDUMP
and the applications which use it (namely refmac ...) unfortunatly fail
with the following error:

---------------------------------------------------------------
>>>>>> CCP4 library signal ccp4_general:Cannot open environ.def
(Success)
raised in ccp4fyp <<<<<<
mtzdump: Cannot open environ.def
mtzdump: Cannot open environ.def
----------------------------------------------------------------

The folder which contains the
files /usr/local/software/ccp4/ccp4-6.0.2/include/ is correctly stated
in the ccp4.setup-bash ...

----------------------------------------------------------------
setenv CCP4_MASTER /usr/local/software/ccp4
setenv CCP4 $CCP4_MASTER/ccp4-6.0.2

# Check for existence of CCP4_MASTER
if (! test -d $CCP4_MASTER) ; then
echo "********************* WARNING **********************"
echo "The directory $CCP4_MASTER"
echo "(assigned to CCP4_MASTER) does not exist."
echo "The CCP4 programs will not run correctly, and any"
echo "installation attempt will have errors or will fail."
echo "********************* WARNING **********************"
fi

# CCP4_SCR: a per-user directory for run-time-generated scratch
# files. A dedicated scratch filesystem is probably better than
(/usr)/tmp
# BINSORT_SCR: a scratch directory for binsort's use; normally same as
CCP4_SCR

setenv CCP4_SCR /tmp/$USER
# check to see if this exists and if not try to make it
test -d $CCP4_SCR

mkdir $CCP4_SCR
test -d $CCP4_SCR

echo "Unable to make CCP4_SCR. CCP4 progs will not run correctly."

setenv BINSORT_SCR $CCP4_SCR
---------------------------------------------------------------

... and the .bashrc contains following entries:

---------------------------------------------------------------
PATH="$PATH:/usr/local/software/ccp4/ccp4-6.0.2/bin/"
PATH="$PATH:/usr/local/software/ccp4/ccp4-6.0.2/include/"
/usr/local/software/ccp4/ccp4-6.0.2/include/ccp4.setup-bash
---------------------------------------------------------------

All the files have the according permissions.

I would greatly appreciate any help on solving this problem.

Thanks a lot in advance and have a nice weekend.

Eike

CCP4bb navigation

CCP4bb <-- 2008 <-- May 2008 <-- 16 May 2008

Previous message:
Subject: Re: Phaser compile errors
From: Nathan I Nicely nathan {- dot -} nicely {- at -} DUKE {- dot -} EDU
Date: 2008-05-16

Next message:
Subject: Re: No permission to CCP4I TOP dir
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-05-16