Re: [ccp4bb] environ.def / default.def

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CCP4bb <-- 2008 <-- May 2008 <-- 16 May 2008

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From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-05-16

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Subject: Re: environ.def / default.def
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-05-16

Subject: Re: environ.def / default.def
From: Eike Schulz eschulz1 {- at -} GWDG {- dot -} DE
Date: 2008-05-16

Hello again,

thanks to some people for their fast and helpfully very detailed advice:

Including

________________________________________________________________

source /usr/local/software/ccp4/ccp4-6.0.2/include/ccp4.setup-bash

source /usr/local/software/ccp4/ccp4-6.0.2/include/ccp4.setup

________________________________________________________________

into my .bashrc did indeed solve the problem with MTZDUMP when executed
from the shell. Further thanks for some other corrections. But
unfortunately the error persists when I try to run refmac from the ccp4i
GUI - it complains not to be able to extract data from an .mtz file.

Did I miss anything important?

Kind regards

Eike

On Fri, 2008-05-16 at 14:37 -0700, William Scott wrote:
>
> On Fri, May 16, 2008 1:06 pm, Eike Schulz wrote:
> > Hello everybody,
> >
> >
> > ----------------------------------------------------------------
> > setenv CCP4_MASTER /usr/local/software/ccp4
> > setenv CCP4 $CCP4_MASTER/ccp4-6.0.2
> >
>
>
> For bash, zsh, etc, you need to start with
>
> export CCP4_MASTER=/usr/local/software/ccp4
> export CCP4=$CCP4_MASTER/ccp4-6.0.2
>
> setenv is specific to (t)csh.
> export is specific to the sh-like shells.
>
>
>
> > ---------------------------------------------------------------
> >
> >
> > ... and the .bashrc contains following entries:
> >
> >
> > ---------------------------------------------------------------
> > PATH="$PATH:/usr/local/software/ccp4/ccp4-6.0.2/bin/"
> > PATH="$PATH:/usr/local/software/ccp4/ccp4-6.0.2/include/"
> > /usr/local/software/ccp4/ccp4-6.0.2/include/ccp4.setup-bash
> > ---------------------------------------------------------------
>
>
> I think that last line would need to be
>
> source /usr/local/software/ccp4/ccp4-6.0.2/include/ccp4.setup-bash
>
> and you shouldn't need this line:
>
> PATH="$PATH:/usr/local/software/ccp4/ccp4-6.0.2/include/"
>
> and you should get rid of the trailing slash on this line:
>
> > PATH="$PATH:/usr/local/software/ccp4/ccp4-6.0.2/bin/"
>
> to make it
>
> > PATH="$PATH:/usr/local/software/ccp4/ccp4-6.0.2/bin"
>
> but if ccp4.setup-bash works, you shouldn't need to explicitly set any
> PATH, including the one you missed (for ccp4i).
>
>
>
>
>
> William G. Scott
>
> Contact info:
> http://chemistry.ucsc.edu/~wgscott/
>
>

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CCP4bb <-- 2008 <-- May 2008 <-- 16 May 2008

Previous message:
Subject: Re: My New Address
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-05-16

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Subject: Re: environ.def / default.def
From: William Scott wgscott {- at -} CHEMISTRY {- dot -} UCSC {- dot -} EDU
Date: 2008-05-16